Journal Publications

Stemness, cancer, and cancer stem cells
David J. Wong, Eran Segal and Howard Y. Chang  
Cell Cycle. 2008 Dec 2;7(23). [Epub ahead of print]Click here to read
Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
Yair Field, Noam Kaplan, Yvonne Fondufe-Mittendorf, Irene K. Moore, Eilon Sharon, Yaniv Lubling, Jonathan Widom, Eran Segal  
PLoS Comput Biol 4(11): e1000216. doi:10.1371/journal.pcbi.1000216
Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation
Ophir Shalem, Orna Dahan, Michal Levo, Maria Rodriguez Martinez, Itay Furman, Eran Segal & Yitzhak Pilpel  
Molecular Systems Biology 4 Article number: 4 doi:10.1038/msb.2008.59, Published online: 14 October 2008  
See also: Faculty of 1000 review
Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes
Michal Rabani, Michael Kertesz, Eran Segal  
Proc Natl Acad Sci U S A. 2008 Sep 24. [Epub ahead of print]
Preferentially Quantized Linker DNA Lengths in Saccharomyces cerevisiae
Ji-Ping Wang, Yvonne Fondufe-Mittendorf, Liqun Xi, Guei-Feng Tsai, Eran Segal, Jonathan Widom  
PLoS Comput Biol 2008, September 12;4(9):e1000175
A Feature-Based Approach to Modeling Protein-DNA Interactions
Eilon Sharon, Shai Lubliner, Eran Segal.  
PLoS Comput Biol 2008, August 22;4(8):e1000154
Geometric constraints on neuronal connectivity facilitate a concise synaptic adhesive code
Shalev Itzkovitz, Leehod Baruch, Ehud Shapiro, and Eran Segal  
Proc Natl Acad Sci U S A. 2008 Jun 26. [Epub ahead of print]  
Estimating cell depth from somatic mutations
Adam Wasserstrom, Dan Frumkin, Rivka Adar, Shalev Itzkovitz, Tomer Stern, Shai Kaplan, Gabi Shefer, Irena Shur, Lior Zangi, Yitzhak Reizel, Alon Harmelin, Yuval Dor, Nava Dekel, Yair Reisner, Dafna Benayahu, Eldad Tzahor, Eran Segal, Ehud Shapiro  
PLoS Comput Biol. 2008 Apr 11;4(4):e1000058
Reconstruction of Cell Lineage Trees in Mice
Adam Wasserstrom, Rivka Adar, Gabi Shefer, Dan Frumkin, Shalev Itzkovitz, Tomer Stern, Irena Shur, Lior Zangi, Shai Kaplan, Alon Harmelin, Yair Reisner, Dafna Benayahu, Eldad Tzahor, Eran Segal, Ehud Shapiro  
PLoS ONE. 2008 Apr 9;3(4):e1939
Module map of stem cell genes guides creation of epithelial cancer stem cells
Wong DJ, Liu H, Ridky TW, Cassarino D, Segal E, Chang HY.  
Cell Stem Cell. 2008 Apr 10;2(4):333-44.  
See also: Faculty of 1000 review
Predicting expression patterns from regulatory sequence in Drosophila segmentation
Eran Segal, Tali Raveh-Sadka, Mark Schroeder, Ulrich Unnerstall & Ulrike Gaul  
Nature 451, 535-540 (31 January 2008)  
See also: Editor Summary
Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells
Neri Minsky, Efrat Shema, Yair Field, Meromit Schuster, Eran Segal & Moshe Oren  
Nature Cell Biology Published online: 16 March 2008, doi:10.1038/ncb1712
Systematic functional characterization of cis-regulatory motifs in human core promoters
Saurabh Sinha, Adam S. Adler, Yair Field, Howard Y. Chang, Eran Segal  
Genome Res. 18:477-488, 2008, Published online before print February 6, 2008, 10.1101/gr.6828808
Revealing Targeted Therapy for Human Cancer by Gene Module Maps
Wong DJ, Nuyten DS, Regev A, Lin M, Adler AS, Segal E, van de Vijver MJ, Chang HY.  
Cancer Res. 2008 Jan 15;68(2):369-78.
Reversal of aging by NFkappaB blockade
Adler AS, Kawahara TL, Segal E, Chang HY  
Cell Cycle. 2007 Dec 26;7(5) [Epub ahead of print]  
See also: Faculty of 1000 review