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Journal Publications


What controls nucleosome positions?
Eran Segal & Jonathan Widom  
Trends Genet. 2009 Jul 9. [Epub ahead of print]
 
From DNA sequence to transcriptional behaviour: a quantitative approach
Eran Segal & Jonathan Widom  
Nature Reviews Genetics, advance online publication, Published online 9 June 2009 (doi:10.1038/nrg2591)
 
Modeling interactions between adjacent nucleosomes improves genome-wide predictions of nucleosome occupancy
Shai Lubliner, Eran Segal  
Bioinformatics 2009 25: i348-i355.
 
Incorporating Nucleosomes into Thermodynamic Models of Transcription Regulation
Tali Raveh-Sadka, Michal Levo, Eran Segal  
Genome Res. 2009. 19:1480-1496
 
The DNA-encoded nucleosome organization of a eukaryotic genome
Noam Kaplan, Irene K. Moore, Yvonne Fondufe-Mittendorf, Andrea J. Gossett, Desiree Tillo, Yair Field, Emily M. LeProust, Timothy R. Hughes, Jason D. Lieb, Jonathan Widom & Eran Segal  
Nature 458, 362-366 (19 March 2009)  
See also: Faculty of 1000 review
 
Poly(dA:dT) tracts: major determinants of nucleosome organization
Eran Segal and Jonathan Widom  
Curr Opin Struct Biol. 2009 Feb;19(1):65-71. Epub 2009 Feb 7
 
Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization
Yair Field, Yvonne Fondufe-Mittendorf, Irene K. Moore, Piotr Mieczkowski, Noam Kaplan, Yaniv Lubling, Jason D. Lieb, Jonathan Widom & Eran Segal  
Nature Genetics Published online: 1 March 2009 | doi:10.1038/ng.324  
See also: Highlight in Nature Reviews Genetics, Faculty of 1000 review.
 
Proteome-wide prediction of acetylation substrates
Amrita Basu, Kristie L. Rose, Junmei Zhang, Ronald C. Beavis, Beatrix Ueberheide, Benjamin A. Garcia, Brian Chait, Yingming Zhao, Donald F. Hunt, Eran Segal, C. David Allis and Sandra B. Hake  
Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13785-90. Epub 2009 Aug 3