Main
Download Data
Visualize in Genomica

Transcription factor expression patterns

Gradient expression patterns for all 8 input transcription factors along the antero-posterior axis of the Drosophila embryo, represented as percent of the egg length (from 1-100).

Transcription factor binding specificities

Position specific weight matrices (PSSMs) for all 8 input transcription factors, represented as an xml file with one entry per factor per position containing its distribution over nucleotides in the order 'A','C','G','T'.

Module expression patterns

Expression patterns for all 44 cis-regulatory sequence modules that we used to train the parameters of the model, along the antero-posterior axis of the Drosophila embryo, represented as percent of the egg length (from 1-100).

Module sequences

Fasta file of sequences for all 44 cis-regulatory sequence modules that we used to train the parameters of the model.

Test module expression patterns (Melanogaster)

Expression patterns for 11 cis-regulatory sequence modules that were not used for constructing the model, and were used to validate the model, represented as percent of the egg length (from 1-100). The model predicts the expression patterns of these modules based only on their sequence.

Module sequences (Melanogaster)

Fasta file of sequences for 11 cis-regulatory sequence modules that we used to validate the model.